Physical Models in Community Detection with Applications to Identifying Structure in Complex Amorphous Systems

We present an exceptionally accurate spin-glass-type Potts model for the graph theoretic problem of community detection. With a simple algorithm, we find that our approach is exceptionally accurate, robust to the effects of noise, and competitive with the best currently available algorithms in terms of speed and the size of solvable systems. Being a local measure of community structure, our Potts model is free from a resolution limit that hinders community solutions for some popular community detection models. It further remains a local measure on weighted and directed graphs. We apply our community detection method to accurately and quantitatively evaluate the multi-scale: multiresolution ) structure of a graph. Our multiresolution algorithm calculates correlations among multiple copies: replicas ) of the same graph over a range of resolutions. Significant multiresolution structures are identified by strongly correlated replicas. The average normalized mutual information and variation of information give a quantitative estimate of the best resolutions and indicate the relative strength of the structures in the graph. We further investigate a phase transition effect in community detection, and we elaborate on its relation to analogous physical phase transitions. Finally, we apply our community detection methods to ascertain the most natural complex amorphous structures in two model glasses in an unbiased manner. We construct a model graph for the physical systems using the potential energy to generate weighted edge relationships for all pairs of atoms. We then solve for the communities within the model network and associate the best communities with the natural structures in the physical systems

An interacting replica approach applied to the traveling salesman problem

We present a physics inspired heuristic method for solving combinatorial optimization problems. Our approach is specifically motivated by the desire to avoid trapping in metastable local minima- a common occurrence in hard problems with multiple extrema. Our method involves (i) coupling otherwise independent simulations of a system ("replicas") via geometrical distances as well as (ii) probabilistic inference applied to the solutions found by individual replicas. The {\it ensemble} of replicas evolves as to maximize the inter-replica correlation while simultaneously minimize the local intra-replica cost function (e.g., the total path length in the Traveling Salesman Problem within each replica). We demonstrate how our method improves the performance of rudimentary local optimization schemes long applied to the NP hard Traveling Salesman Problem. In particular, we apply our method to the well-known "$k$-opt" algorithm and examine two particular cases- $k=2$ and $k=3$. With the aid of geometrical coupling alone, we are able to determine for the optimum tour length on systems up to $280$ cities (an order of magnitude larger than the largest systems typically solved by the bare $k=3$ opt). The probabilistic replica-based inference approach improves $k-opt$ even further and determines the optimal solution of a problem with $318$ cities and find tours whose total length is close to that of the optimal solutions for other systems with a larger number of cities.Comment: To appear in SAI 2016 conference proceedings 12 pages,17 figure

Multiresolution community detection for megascale networks by information-based replica correlations

We use a Potts model community detection algorithm to accurately and quantitatively evaluate the hierarchical or multiresolution structure of a graph. Our multiresolution algorithm calculates correlations among multiple copies ("replicas") of the same graph over a range of resolutions. Significant multiresolution structures are identified by strongly correlated replicas. The average normalized mutual information, the variation of information, and other measures in principle give a quantitative estimate of the "best" resolutions and indicate the relative strength of the structures in the graph. Because the method is based on information comparisons, it can in principle be used with any community detection model that can examine multiple resolutions. Our approach may be extended to other optimization problems. As a local measure, our Potts model avoids the "resolution limit" that affects other popular models. With this model, our community detection algorithm has an accuracy that ranks among the best of currently available methods. Using it, we can examine graphs over 40 million nodes and more than one billion edges. We further report that the multiresolution variant of our algorithm can solve systems of at least 200000 nodes and 10 million edges on a single processor with exceptionally high accuracy. For typical cases, we find a super-linear scaling, O(L^{1.3}) for community detection and O(L^{1.3} log N) for the multiresolution algorithm where L is the number of edges and N is the number of nodes in the system.Comment: 19 pages, 14 figures, published version with minor change

Local resolution-limit-free Potts model for community detection

We report on an exceptionally accurate spin-glass-type Potts model for community detection. With a simple algorithm, we find that our approach is at least as accurate as the best currently available algorithms and robust to the effects of noise. It is also competitive with the best currently available algorithms in terms of speed and size of solvable systems. We find that the computational demand often exhibits superlinear scaling L^1.3 where L is the number of edges in the system, and we have applied the algorithm to synthetic systems as large as 40x10^6 nodes and over 1x10^9 edges. A previous stumbling block encountered by popular community detection methods is the so-called "resolution limit." Being a "local" measure of community structure, our Potts model is free from this resolution-limit effect, and it further remains a local measure on weighted and directed graphs. We also address the mitigation of resolution-limit effects for two other popular Potts models.Comment: 16 pages, 12 figures; title change for Physical Review E, minor editing, updated reference

Local multiresolution order in community detection

Community detection algorithms attempt to find the best clusters of nodes in an arbitrary complex network. Multi-scale ("multiresolution") community detection extends the problem to identify the best network scale(s) for these clusters. The latter task is generally accomplished by analyzing community stability simultaneously for all clusters in the network. In the current work, we extend this general approach to define local multiresolution methods, which enable the extraction of well-defined local communities even if the global community structure is vaguely defined in an average sense. Toward this end, we propose measures analogous to variation of information and normalized mutual information that are used to quantitatively identify the best resolution(s) at the community level based on correlations between clusters in independently-solved systems. We demonstrate our method on two constructed networks as well as a real network and draw inferences about local community strength. Our approach is independent of the applied community detection algorithm save for the inherent requirement that the method be able to identify communities across different network scales, with appropriate changes to account for how different resolutions are evaluated or defined in a particular community detection method. It should, in principle, easily adapt to alternative community comparison measures.Comment: 19 pages, 11 figure

A Replica Inference Approach to Unsupervised Multi-Scale Image Segmentation

We apply a replica inference based Potts model method to unsupervised image segmentation on multiple scales. This approach was inspired by the statistical mechanics problem of "community detection" and its phase diagram. Specifically, the problem is cast as identifying tightly bound clusters ("communities" or "solutes") against a background or "solvent". Within our multiresolution approach, we compute information theory based correlations among multiple solutions ("replicas") of the same graph over a range of resolutions. Significant multiresolution structures are identified by replica correlations as manifest in information theory overlaps. With the aid of these correlations as well as thermodynamic measures, the phase diagram of the corresponding Potts model is analyzed both at zero and finite temperatures. Optimal parameters corresponding to a sensible unsupervised segmentation correspond to the "easy phase" of the Potts model. Our algorithm is fast and shown to be at least as accurate as the best algorithms to date and to be especially suited to the detection of camouflaged images.Comment: 26 pages, 22 figure

Center of Mass Correction to an Error-Prone Undergraduate Centripetal Force Experiment

In this undergraduate laboratory experiment we measure the centripetal force acting on a bob in uniform circular motion. As the experiment was originally designed, it consistently yielded large errors due to a subtle twist of the bob as the mass was increased incrementally. This error is due to the fact that the center of mass changes relative position as the mass is incremented; therefore, the spring that provides the centripetal force for the apparatus causes an unintended torque on the bob. A solution to the problem consists of positioning the incremental masses so that the center of mass does not change position. This simple correction provides a useful lesson on redesigning an undergraduate laboratory experiment to obtain better agreement with theory. (C) 2003 American Association of Physics Teachers